MCF10A metabolism screen
Marion Hardy
2023-10-24
Introduction
Analysis of MCF10A in 16 different conditions 2 biological replicates per sample
Make all dds objects
Compared to imaging media
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
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## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0
Compared to Growth Medium
Compared to Oligomycin
Compared to HC megative IM
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0
Compared to HC megative IM
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0
Compared to CT negative imaging medium
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
## replacement has 1 row, data has 0## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") :
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