Introduction

Analysis of MCF10A in 16 different conditions 2 biological replicates per sample

Make all dds objects

Compared to imaging media

## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0

Compared to Growth Medium

Compared to Oligomycin

Compared to HC megative IM

## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0

Compared to HC megative IM

## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0

Compared to CT negative imaging medium

## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0
## Error in `$<-.data.frame`(`*tmp*`, ".sign", value = "activated") : 
##   replacement has 1 row, data has 0